Here’s what I would do.

Deku.

• for Deku’s Character I would change him to be more Confident and Pragmatic, he’s still Friendly and Selfless

• as for his Backstory deku has suffered severe Discrimination which has had a negative effect on his Mental State and grow a bit Distrustful when it comes to connecting to people.

• I would have deku not lose One For All at the End of the Series.
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Class 1A.

• The fist thing I would change about the Story is i would make the story longer, I would have Class 1A go through their 2nd Year and 3rd Year (I would have them Enter their 2nd Year around the time of the Joint Training Arc, and I would have them enter their 3rd Year during the Final War Arc.
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The League of Villains.

• In my Version the League was Founded by All For One and his Villain Organization called T•Y•P•H•O•N.

• I would have Magne not be killed, I would also give her a Female Design (because I keep thinking she’s a guy).

• I would also have Mustard be a main member of the league.
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Additional Arcs.

• I would give certain characters their own Unique Arcs.

• Uraraka: I would give Urarka an Arc either about Helping her Family’s Situation or helping Deku with his Self Confidence and Trauma.

• Shinso: I would give Shinso an Arc about training to get into Class 1A.

• Shoji: I would have Shoji be the center of an Arc where they tackle the Issue of Heteromorph Discrimination and dealing with the Creature Rejection Clan.

• Bakugou: i would give Bakugou a full arc about him Acknowledging and trying to make up for all his Wrongdoings and learning how to actually control his Anger.

• Kaminari: I would give Kaminari an arc about him being the UA Traitor but he isn’t aware, he’s secretly under All For One’s Influence.

• Ashido and Kirishima: Ashido and Kirishima’s arc would involve Gigantomachia a bit more and the would have more Encounters.
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All Might vs All For One.

• An addition I would add is they didn’t All Might’s first battle against All For One was a Previous War between Hero Veterans and Villains given Gigantification Quirks by All For One.
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The Origins of Meta Abilities and the Quirk Singularity.

• for the Origins of Quirks: in my Version the Story takes a lot from Greek Mythology, during the beginning of Human Civilization the Earth/Gaia granted Specific People Unique Abilities (much like the Lion Turtle from the Avatar Franchise).

• Accumulation Quirks: Accumulation Quirks require the user to Store Energy in order to use their Abilities, this energy storage also can slightly extend the users lifespan.

• Heteromorph/Mutant Quirks: Heteromorph Quirks are one of the most Unique Types of Meta Abilties but the most Hated by those, Mutant Quirks. Change a persons entire Biology and Anatomy and people with Heteromorph quirks live much longer than other people due to extended lifespans. 

Transformation Quirks: Transformation Quirks allow people to Change or Alter their body’s, these transformations aren’t permanent and will run out eventually.

• Emitter Quirks: Emitter Quirks allow people to activate an ability that can affect another person.

• Quirk Mutations: Quirk Mutations happen when the Quirk Factors from Parents cancel each other out causing a new Quirk Factor Develop.

• Quirk Singularity: the Quirk Singularity is when Quirks become so Powerful and Complex that they will Develop Self Awareness and a Will of their own and no longer listen to their Host/Wielders.

• Quirk Resonance: Quirk Resonance is when 2 Compatible Abilities are able to create a new Ability or Ultimate Move, it can be caused on a Intimate Level or by Force.

• Power System: if I could add a Power System to MHA it would be similar to Naruto’s Chakra and Black Clover’s Mana, I would call it X-Factor where people are born with different amounts and based on how much your X-Factor Reserves are your born with a Powerful/Complex Quirk or a Weak/Simple Quirk.
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What do you think, wha would you Add or Change about the Story?

If you could Add and/or Change about the My Hero Academia Story What would it be? (Updated Edition).