RNA Consensus Structure from MSA + Secondary Structures

technical question

Hello! For a project I need to generate a consensus secondary structure given an MSA and a fasta file for each sequence contain their respective sequence and secondary structure (unaligned). How can I construct a consensus secondary structure using this? I don't believe I need to use RNAalifold or something since I already have the individual secondary structures.

Posted Feb 15, 2026, 3:18 AM UTC

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