Netpass refuses to update and refuses to delete unless breaking everything.

Hi! I dont post to reddit often, but I am at a complete loss as to what to do.

It all started when I switched my files from a bad SD card to a legit one. Everything was booting up fine, and so I just wanted to update a few things.

I go into universal downloader to update netpass since I have a VERY outdated version, weird thing was the update wasn't showing up. I tried just installing it and it failed, weird. Anyway, I thought maybe just deleting the title from FBI would help but it absolutely did not. Now all my apps are gone. I tried to put my backup on my SD and now my theme is gone too. However, if you put the microsd into a pc, all the files are there? This is an issue that ONLY seems to happen when I try messing around with netpass, I can't update it, AND I can't delete it? I've asked others in the netpass discord and they said I should go to the 3ds piracy discord, but they give me the same answer, that I should go back and ask someone from the netpass discord.

Am I better off just resetting everything? If so how would I do that? I've been to so many discord and reddit threads I have no clue what to do and I don't want to make this issue worse. (I actually did several times and could only get it back to the beginning of the problem, its like an endless cycle)