CNV chromosomal plot from data
Hi everybody,
I have some CNV data that need to be turned into a chromosomal plot. The format is like this:
chr start end ploidy loss/gain
chr1 86000000 117150000 1 loss
chr2 70250000 70500000 3 gain
chr2 203050000 204650000 3 gain
(The last column can probably be omitted as we have all the info we need in the ploidy column). I searched online and found this tool which is supposed to be more or less what I need, but I don't have a lot of experience in R and I'm not really sure how to format my data. Is there anything else available I could use?
Any help would be appreciated, and thanks in advance!
Posted Feb 21, 2016, 9:56 PM UTC
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