[Meta] Hello, who are you, and what do you work with?
I am interested in becoming an independent researcher of synthetic proteins and intend to learn how to use Molecular Dynamics simulations as a tool in artificial protein design.
Posted May 7, 2016, 7:38 PM UTC
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Well, currently I am a graduate Biophysics Student who loves to play with proteins using MD simulation. I extensively use gromacs and NAMD for my MD, with my major research interest in Membrane Proteins.
Cool, right now I am looking into building and visualizing large systems of molecules, what method are used to construct systems such as this?
Would be great if you could provide me the link of the paper or else with this image so that I can tell you which methods to implement ?
Source For that particular example.
I am however interested in various levels of coarse grained simulation of the various components and subcomponents which protein tertiary structures consist of.