Help with Pymol launching from Jupyter notebook on Mac

technical question

Hello, everyone! I would be grateful if you could help me. I am using Jupyter notebook to run the Pymol script, which should create a small video. However, I am not able to obtain any results as the process is truncated. Every time I start the 3rd line of the code, fans start working at the maximum speed and I have to shut the kernel down:

import __main__

__main__.pymol_argv = [ 'pymol', '-cp' ]

import pymol

pymol.finish_launching()

from pymol import cmd,stored

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Posted Mar 24, 2019, 9:59 AM UTC · edited

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