PhyloBot v0.7 Information and Patch Notes [Bot Info]

Pinned

I am a bot created to help out here in r/whatsthissnake. u/Phylogenizer set me up with the goals of increasing the amount of information conveyed to people asking for identification help, to assist those interested in snake evolution and biogeography (SEB) in quickly accessing the most recent scientific publications concerning phylogeography and phylogenomics and to provide consistent up to date taxonomic information. Since my original debut here in r/whatsthissnake in August 2018 (happy cakeday to me), I've expanded my functionality to r/Herpetology, r/Snakes, r/Sneks and r/Reptiles.

At my core, I am a keyword bot. One of my main functions is to reply with short species accounts of identified snakes. These species accounts are written by users of this subreddit - right now we're prioritizing information on North American species, as this is where more of our submissions come from. If you'd like to write a short species account, especially for species outside of North America, I invite you to submit your accounts to me using a www.pastebin.com link in a private message. My species accounts are saved in text files and use the standard "old reddit" markup characters. u/Phylogenizer edits them to help curate and provide consistency. If you see anything wrong in an account, blame him not me, but do send a quick PM with your correction - we'll fix it.

My second main function is to reply to commands given by users, to invoke vetted information on snakes. These commands are useful and tailored to frequently asked questions in the subreddit. Commands are preceded by an exclamation point - you can see the full list below. If there's something you'd like to change or add, feel free to comment below and we'll try to work it in to the next update.

I am NOT a verification bot - just because you see me reply to a user does not mean I endorse that ID. I respond to anyone and everyone in my core subreddits (/r/Herpetology, r/WhatsThisSnake, r/Snakes) and to select commenters from these subreddits wherever they go on Reddit.

I also do some of the more monotonous tasks - for example, I can tell if someone has provided a geographic location properly, and if they haven't, I ask them, within thirty seconds of their post, to provide it and I explain why it is important - no humans needed. I also automatically reply to posts with the "Dead Snake" flair to include some basic information on why killing snakes is not favorable. We save a lot of time and energy with this automation.

I concatenate responses and posts replies as a single comment. Nifty eh? You can use multiple commands and species names, and the bot won't clutter up the thread with a comment for each. This also applies to those of you the bot follows outside of the home subreddits. Where once it crashed the bot, now you are freed. It even puts a little line between entries. You're now only limited by how many characters a Reddit response can be.

In the future, I hope to be able to respond automatically to much more. I'm still a baby in development. I will go up, down, and I will probably break a few times. Please be patient with me, and don't forget, you can help by writing well-sourced species accounts in your own words for species not on the list below.

Thanks!

PhyloBot

PS - I am written in Python.

***

Features in v0.7:

Small update, but needed - Here's what is new or different:

Added more of the top responders from the home subreddits, empowering them to use the bot anywhere on Reddit. PM me if you think I missed you.

Typo, dead link and other minor formatting fixes.

Tweaked some of the species accounts based on FAQ's.

The problem where !deadsnake doesn't post when a user improperly indicates location but properly uses the 'Dead Snake' flair remains one where both are returned but in separate comments. Future updates should tweak how this performs but for the time being it is not a problem.

Added the following Commands: (See below for a full list)

!pool - Provides information on mitigating pools as wildlife sinks

***

Current List of Commands - anyone should be able to use these in the home subreddits of r/Herpetology, r/Snakes, r/WhatsThisSnake, r/Reptiles and r/Sneks. The current, full list of commands is:

!deadsnake - Invokes the information from the dead snake auto response

!myths - Provides a list of common snake myths ( in development - send me your favorite with a high quality link to a source refuting it and I'll put it in!)

!poisonous or !venomous - Provides information on the definitions of venomous and poisonous as they relate to snakes

!keels - Provides information on snake scale architecture.

!cats - Provides information on outdoor cats, one of the largest threats to wildlife worldwide.

!shed - Provides basic information and resources on identifying a snake from a shed skin.

!blackrat - Provides a basic rundown of why you might hear the term "black ratsnake" and why, as an enlightened individual, you don't repeat it.

!resources - Provides a basic list of resources for worldwide snake identification

!gluetrap - Provides information on gluetraps and how to get snakes unstuck

!location - Invokes the "location needed" message from the auto response on r/whatsthissnake

!wildpet - Provides information on why keeping wild snakes as pets isn't usually a good idea, even if they come from a pet store.

!aggressive or !defensive - Rebuttal to the commonly misunderstood defensive posturing in snakes.

!headshape - Explanation of how head shape isn't a reliable indication of if a snake is venomous

!rhyme - A specific response to the "red touches yellow, kill a fellow" rhyme.

!hot - Provides information on best practices in biological terminology of venomous snakes.

!specificepithet - Explains species names and their formatting. Uses an example, but not snake specific.

!harmless - An explanation of the word harmless and how the category does indeed include species that bite in self defense.

!ecdysis - Provides information on the shedding process, needs to be expanded.

!snakehole - Info on how snakes don't dig their own burrows

!pool - Provides information on mitigating pools as wildlife sinks

***

Current Species List:

Thamnophis sirtalis

Pituophis catenifer

Pituophis melanoleucus

Storeria dekayi

Lachesis muta

Pantherophis guttatus

Pantherophis slowinskii

Pantherophis emoryi

Heterodon simus

Storeria occipitomaculata

Storeria victa

Micrurus fulvius

Micrurus tener

Coluber constrictor

Agkistrodon contortrix

Agkistrodon laticinctus

Agkistrodon conanti

Agkistrodon piscivorus

Crotalus scutulatus

Crotalus atrox

Haldea striatula

Rhinocheilus lecontei

Regina rigida

Heterodon platirhinos

Lampropeltis getula

Lampropeltis splendida

Lampropeltis nigra

Lampropeltis californiae

Charina bottae

Charina umbratica

Nerodia sipedon

Nerodia erythrogaster

Nerodia fasciata

Pantherophis alleghaniensis

Masticophis flagellum

Pantherophis spiloides

Pantherophis obsoletus

Lampropeltis triangulum

Lampropeltis elapsoides

Lampropeltis gentilis

Lampropeltis annulata

Lampropeltis polyzona

Lampropeltis abnorma

Lampropeltis micropholis

Natrix natrix

Natrix helvetica

Nerodia rhombifer

Nerodia taxispilota

Cemophora coccinea

Cemophora lineri

Posted Mar 19, 2020, 8:27 PM UTC

518
shrike1978Reliable Responder - Moderator•

!pool

Cemophora coccinea

2
SEB-PHYLOBOTOPNatural History Bot •

Scarlet Snakes Cemophora coccinea and Cemophora lineri are small (36-51 cm, record 82.8 cm), harmless colubrid snakes native to the southeastern United States. They are shy, fossorial snakes frequently found under logs, rocks, and debris in sandy, forested habitats. Scarlet Snakes feed on reptile eggs, lizards, other snakes, and small mammals.

Scarlet Snakes are white, gray, or yellow, with black bordered, red blotches that extend nearly to the belly, sometimes appearing banded from above. Often confused with harmless Scarlet Kingsnakes Lampropeltis elapsoides or venomous Coral Snakes Micrurus sp., they can be distinguished from these snakes by the presence of blotches that do not extend onto the belly that form white "saddles". Scarlet Kingsnakes and Eastern Coral Snakes have bands that extend all the way around the body. Use the !keels command for more information about snake color patterns and scale architecture.

Scarlet Snakes are currently recognized as distinct from Texas Scarlet Snakes Cemophora lineri and can be differentiated based on range, but in terms of morphology, "Cemophora lineri differs from C. coccinea in having a greater average number of ventral scales (C. lineri: 178– 195 [X = 186.1]; C. coccinea: 150–185 [X = 167.5]) and black dorsal bands that extend to the third, fourth, or fifth dorsal scale row (vs. extending laterally to dorsal scale row one or two in C. coccinea)".

Range Map | Recent Phylogeography

This short account was prepared by u/shrike1978 and edited by u/Phylogenizer.


Snakes and other creatures often fall victim to the aquatic pitfall traps that are pools, hot tubs and human constructed ponds. Several inexpensive products can reduce the amount of native wildlife killed. Among the most popular are the Frog Log and the Critter Skimmer.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
PhylogenizerReliable Responder - Moderator•

What do you think of the Cemophora map? I wish the Weinell paper would have made one based on their results that I could have just copied over and credited. I got this one from Wikimedia and updated it, added colors.

1
shrike1978Reliable Responder - Moderator•

I like the map. I wasn't really able to find a good one when I was looking.

1
breckaReliable Responder•

The range map for Haldea striatula doesn't work.

2
SEB-PHYLOBOTOPNatural History Bot •

Rough Earthsnakes Haldea striatula are small (record 39.3 cm) natricine snakes found in eastern North America that feed on primarily earthworms.

Rough earthsnakes are considered harmless to people and pets and rarely bite in self defense. They have keeled scales, a cone-shaped head and pointed snout. The internasal scales that are generally paired in other snakes are fused.

Haldea striatula is live bearing, having as many as 7 small (7.5-12.5 cm) young in the late summer. Neonates somewhat resemble ringneck snakes with a light colored neck collar, but lose this trait as they become adults.

Range map.

This short account was prepared by u/unknown_name and edited by u/Phylogenizer.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
PhylogenizerReliable Responder - Moderator•

Thanks, a lot of those natureserve maps got moved, I have to put in some work to make new maps.

1
shrike1978Reliable Responder - Moderator•

u/Phylogenizer

The bot is going nuts. Seems like reddit comments weren't committing for a few minutes, and the two ID's I posted during that time are being repeatedly and endlessly responded to.

2
PhylogenizerReliable Responder - Moderator•

Thanks - it fixed itself now though right? Something weird with reddit.

1
shrike1978Reliable Responder - Moderator•

Yea, stopped about 5 minutes after I posted this.

1
PhylogenizerReliable Responder - Moderator•

It only replied 85 times not sure what the problem is... =D

2
PhylogenizerReliable Responder - Moderator•

Add "breeds" command

1
unknown_nameReliable Responder - Moderator•

Virginia valeriae

Haldea striatula

1
SEB-PHYLOBOTOPNatural History Bot •

Rough Earthsnakes Haldea striatula are small (record 39.3 cm) natricine snakes found in eastern North America that feed on primarily earthworms.

Rough earthsnakes are considered harmless to people and pets and rarely bite in self defense. They have keeled scales, a cone-shaped head and pointed snout. The internasal scales that are generally paired in other snakes are fused.

Haldea striatula is live bearing, having as many as 7 small (7.5-12.5 cm) young in the late summer. Neonates somewhat resemble ringneck snakes with a light colored neck collar, but lose this trait as they become adults.

Range map.

This short account was prepared by u/unknown_name and edited by u/Phylogenizer.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
[deleted]•

[deleted]

1
shrike1978Reliable Responder - Moderator•

Need some links for a Facebook discussion

!aggressive !myths

1
SEB-PHYLOBOTOPNatural History Bot •

Here is a list of common myths and misconceptions about snakes. The below statements are false:

Non-venomous snakes shake their tails to mimic rattlesnakes

Baby venomous snakes are more dangerous than adults

Snakes Chase People

Rattlesnakes are losing their rattle because of {insert reason}

The only good snake is a dead snake


Snakes aren't known for 'aggression' or 'territoriality' but have developed impressive defensive anti-predator displays. Striking, coiling, hissing and popping are all defensive behaviors. The first line of defense in snakes is typically to hold still and rely on camouflage, or flee. Some species will move past people to get away - sometimes interpreted as 'chasing'. Cottonmouth snakes Agkistrodon piscivorus and A. conanti are among some species that may aggressively flee, but if you leave a safe distance between yourself, any snake and the snake's intended destination, there is no reason to expect to experience it.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
unknown_nameReliable Responder - Moderator•

!blackrat

1
SEB-PHYLOBOTOPNatural History Bot •

Black Ratsnake is a common name for a color pattern shared by three different species of Pantherophis ratsnake across the northern portion of their range.

The black ratsnake species complex, formerly Elaphe obsoleta, underwent revision in 2001-2002 from multiple authors and received two main changes. First, the complex was delimited in Burbrink 2001 based on what were then modern molecular methods, where three distinct lineages were uncovered that did not reflect previous subspecies designations. Each of the three geographically partitioned taxa were elevated to full species status, and subspecies were discarded. The polytypic color patterns in these species are most likely under strong selection by the local environment and don't reflect evolutionary history. Where species intersect and habitat converges, color pattern also converges, leaving these species nearly morphologically indistinguishable to the naked eye. Second, using Elaphe as a genus name wasn't the best way to reflect phylogenetic history, so the genus Pantherophis was adopted for new world ratsnakes in Utiger 2002. Remember, species names are hypotheses that are tested and revised. While the analyses published in 2001 are strong and results are geographically similar in other taxa, these species are currently being investigated using modern molecular methods and the taxonomy may be updated in the future.

The three currently accepted species in this complex are Western Ratsnake Pantherophis obsoletus, Central Ratsnake Pantherophis spiloides and Eastern Ratsnake Pantherophis alleghaniensis. Range Map


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
unknown_nameReliable Responder - Moderator•

Lampropeltis getula

1
SEB-PHYLOBOTOPNatural History Bot •

Eastern kingsnakes Lampropeltis getula are large (90-122 cm record 208.3 cm) non-venomous colubrid snakes with smooth scales, part of a group of kingsnakes called the getula species complex. Eastern Kingsnakes are found east of the Appalachian Mountains. They kill by constriction and will eat mainly rodents, lizards, and other snakes, including venomous snakes. Kingsnakes are immune to the venom of the species on which they prey. Individuals are variable and are best distinguished from other similar kingsnakes by geographic range.

Range map | Relevant/Recent Phylogeography: Link 1 Link 2

Two additional species, subsets of the Eastern Kingsnake, were recently identified but the analysis did not include hypothesis testing or robust molecular methods. Recent work by the same authors is dismissed for these same reasons so SEB does not yet recognize these as taxa.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
unknown_nameReliable Responder - Moderator•

!wildpet

1
SEB-PHYLOBOTOPNatural History Bot •

Please leave wild animals in the wild. This includes not purchasing common species collected from the wild and sold cheaply in pet stores, like Thamnophis Ribbon and Gartersnakes and Opheodrys Greensnakes. Brownsnakes Storeria found around the home do okay in urban environments and don't need 'rescue'; the species typically fails to thrive in captivity and should be left in the wild. Reptiles are kept as pets or specimens by many people but captive bred animals have much better chances of survival, as they are free from parasite loads, didn't endure the stress of collection and shipment, and tend to be species that do better in captivity. Taking an animal out of the wild is not ecologically different than killing it, and most states protect non-game native species - meaning collecting it probably broke the law.

If you insist on keeping a wild pet, it is your duty to plan and provide the correct veterinary care, which often is two rounds of a pair of the 'deworming' medications Panacur and Flagyl and injections of supportive antibiotics. This will cost more than enough to offset the cheap price tag on the wild caught animal at the pet store or reptile show and increases chances of survival past about 8 months, but does not offset removing the animal from the wild.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
kuhlifan•

The "frog log" Amazon link in the pool command says the page isn't found

1
Fridayssun•

I was wondering whether it would be worthwhile to add a bot for sexing snakes? To be honest, while I'm actually not at all well versed in snakes, I think it's very important to differentiate between sex/gender, male/boy, and female/girl. I think people are looking for which genitalia and associated functions an individual has, not the anthropomorphized roles the latter play. I can't offer any insight into sexing, but I would be happy to write a paragraph explaining the terms

1
TheChuck42Reliable Responder•

The range map link in Nerodia erythrogaster doesn't seem to be working.

1
SEB-PHYLOBOTOPNatural History Bot •

Plain-bellied Watersnakes Nerodia erythrogaster are medium to large (record 163.6 cm) natricine snakes with keeled scales often found in and around water. They are commonly encountered fish and amphibian eating snakes across much of eastern North America and extend into Northern Mexico.

Nerodia watersnakes may puff up or flatten out defensively and bite. They secrete a foul smelling substance from the cloaca called musk and can deliver a weak anticoagulant venom used in prey handling from the back of the mouth, but are not considered medically significant to humans - bites just need soap and water.

Found throughout eastern North America, it is sometimes confused with the Common Watersnake Nerodia sipedon or the Banded Watersnake N. fasciata. The best character to diagnose N. erythrogaster is its namesake plain belly that varies across the range from yellow to orange. Adult Plain-bellied Watersnakes tend to lose or greatly reduce their banding - adults are often completely two-toned. Banded Watersnakes have even, connecting bands across the top of the snake all the way down the body. N. erythrogaster does not. In Common Watersnakes N. sipedon, bands typically break up or become mismatched after the first third of the body as in N. erythrogaster, but has a patterned belly.

Range Map | Relevant/Recent Phylogeography

This genus is in need of revision using modern molecular methods, but this particular species has been investigated using basic molecular methods. The authors found that, just like many other snakes species, subspecies based on clinal color patterns didn't correspond to evolutionary history. Subspecies should thus not be recognized.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
breckaReliable Responder•

Lot of those Natureserve ones aren't. Think Phylo's working on new ones

1
breckaReliable Responder•

Lampropeltis triangulum

1
SEB-PHYLOBOTOPNatural History Bot •

Eastern Milksnakes Lampropeltis triangulum are medium-sized (record 132.1 cm) non-venomous colubrid snakes with smooth scales, part of a group of seven species of milk and kingsnakes called the triangulum species complex. Eastern Milksnakes are found in the north and eastern parts of North America. They kill by overpowering their prey and will eat mainly rodents, but are generalists and consume lizards, birds, eggs and invertebrates. Eastern Milksnakes are variable in color - geographic range helps greatly in identification and to distinguish them from other species.

Range map | Relevant/Recent Phylogeography: Link 1 Link 2

This recent multi-locus work is well done, published in a high-tier journal and was well-received by those who understand the coalescent. It's supported by morphological work (Link 2) and has been adopted by the major North American herp societies.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
falconsnakecat786•

!myths

1
SEB-PHYLOBOTOPNatural History Bot •

Here is a list of common myths and misconceptions about snakes. The below statements are false:

Non-venomous snakes shake their tails to mimic rattlesnakes

Baby venomous snakes are more dangerous than adults

Snakes Chase People

Rattlesnakes are losing their rattle because of {insert reason}

The only good snake is a dead snake


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
phurt77•

!rhyme

1
SEB-PHYLOBOTOPNatural History Bot •

The traditional color-based rhyme for coralsnakes isn't recommended as an identification trick as it isn't foolproof and only applies to snakes that live in parts of North America. See this summary compiled by our own u/RayInLA for more. It's far more advantageous to familiarize yourself with venomous snakes in your area through photos and field guides or by following subreddits like r/whatsthissnake than it is to try to apply any generic trick.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

2
PhylogenizerReliable Responder - Moderator•

Happy Cake Day

1
bgenter3•

!hot

1
SEB-PHYLOBOTOPNatural History Bot •

The term used for wild venomous snakes is 'venomous'. Across species, strength of venom is a spectrum, and delivery method is also quite variable. The term 'hot' is pet trade slang and isn't used in biology.


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
NoahNoodle•

Lampropeltis californiae

1
SEB-PHYLOBOTOPNatural History Bot •

California kingsnakes Lampropeltis californiae are large (76-122 cm record 200 cm) non-venomous colubrid snakes with smooth scales, part of a group of kingsnakes called the getula species complex. California Kingsnakes range from west of the continental divide to the Pacific ocean, overlapping with the Desert Kingsnake Lampropeltis splendida at the Cochise Filter Barrier. They kill by constriction and will eat mainly rodents, lizards, and other snakes, including venomous snakes. Kingsnakes are immune to the venom of the species on which they prey. Individuals are variable and are best distinguished from other similar kingsnakes by geographic range.

A wide variety of color patterns make California Kingsnakes very popular in the pet trade.

Range map | Relevant/Recent Phylogeography: Link 1 Link 2 Link 3


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1
rms1111•

!blackrat

1
SEB-PHYLOBOTOPNatural History Bot •

Black Ratsnake is a common name for a color pattern shared by three different species of Pantherophis ratsnake across the northern portion of their range.

The black ratsnake species complex, formerly Elaphe obsoleta, underwent revision in 2001-2002 from multiple authors and received two main changes. First, the complex was delimited in Burbrink 2001 based on what were then modern molecular methods, where three distinct lineages were uncovered that did not reflect previous subspecies designations. Each of the three geographically partitioned taxa were elevated to full species status, and subspecies were discarded. The polytypic color patterns in these species are most likely under strong selection by the local environment and don't reflect evolutionary history. Where species intersect and habitat converges, color pattern also converges, leaving these species nearly morphologically indistinguishable to the naked eye. Second, using Elaphe as a genus name wasn't the best way to reflect phylogenetic history, so the genus Pantherophis was adopted for new world ratsnakes in Utiger 2002. Remember, species names are hypotheses that are tested and revised. While the analyses published in 2001 are strong and results are geographically similar in other taxa, these species are currently being investigated using modern molecular methods and the taxonomy may be updated in the future.

The three currently accepted species in this complex are Western Ratsnake Pantherophis obsoletus, Central Ratsnake Pantherophis spiloides and Eastern Ratsnake Pantherophis alleghaniensis. Range Map


I am a bot created for r/whatsthissnake, r/snakes and r/herpetology to help with snake identification and natural history education. You can find more information, including a comprehensive list of commands, here and report problems here.

1